Before	Ref	After	Var	Biliary-AdenoCa::BD121T	Biliary-AdenoCa::BD173T___ICGC:BTCA-JP	Biliary-AdenoCa::BD182T___ICGC:BTCA-JP	Biliary-AdenoCa::BD223T___ICGC:BTCA-JP	ColoRect-AdenoCa::sysucc-311T	Liver-HCC::HCC34T	Panc-AdenoCa::PCSI_0060_Pa_X___ICGC:PACA-CA	Skin-Melanoma::SKCM-JWCI-WGS-8-Tumor___doi:10.1016/j.cell.2012.06.024	Eso-AdenoCa::ESO-173___PMID:23525077	Uterus-AdenoCa::T155	ACUTE MYELOID LEUKEMIA::TCGA-AB-2824-03B-01W-0728-08___TCGA-LAML	ACUTE MYELOID LEUKEMIA::TCGA-AB-2851-03B-01W-0728-08___TCGA-LAML	ACUTE MYELOID LEUKEMIA::TCGA-AB-2867-03B-01W-0728-08___TCGA-LAML	ACUTE MYELOID LEUKEMIA::TCGA-AB-2868-03B-01W-0728-08___TCGA-LAML	BLADDER UROTHELIAL CARCINOMA::TCGA-G2-AA3B-01A-11D-A391-08___TCGA-BLCA	BLADDER UROTHELIAL CARCINOMA::TCGA-GC-A6I3-01A-11D-A31L-08___TCGA-BLCA	CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA::TCGA-FU-A3HZ-01A-11D-A20U-09___TCGA-CESC	COLON ADENOCARCINOMA::TCGA-AY-4071-01A-01W-1073-09___TCGA-COAD	ESOPHAGEAL CARCINOMA::TCGA-2H-A9GM-01A-11D-A37C-09___TCGA-ESCA	ESOPHAGEAL CARCINOMA::TCGA-IG-A4QS-01A-11D-A27G-09___TCGA-ESCA	ESOPHAGEAL CARCINOMA::TCGA-R6-A6L4-01A-11D-A31U-09___TCGA-ESCA	HEAD AND NECK SQUAMOUS CELL CARCINOMA::TCGA-BA-A4IG-01A-11D-A25Y-08___TCGA-HNSC	RECTUM ADENOCARCINOMA::TCGA-AG-3892-01A-01W-1073-09___TCGA-READ	RECTUM ADENOCARCINOMA::TCGA-AG-3902-01A-01W-1073-09___TCGA-READ	Stomach-AdenoCa::TCGA-BR-6453-01A-11D-1800-08	Stomach-AdenoCa::TCGA-D7-A4Z0-01A-22D-A25D-08	Uterus-AdenoCa::TCGA-A5-A0GP-01A-11W-A062-09	UTERINE CORPUS ENDOMETRIAL CARCINOMA::TCGA-AJ-A5DW-01A-11D-A27P-09___TCGA-UCEC	UTERINE CORPUS ENDOMETRIAL CARCINOMA::TCGA-AP-A1E0-01A-11D-A135-09___TCGA-UCEC	UTERINE CORPUS ENDOMETRIAL CARCINOMA::TCGA-AX-A1CE-01A-11D-A135-09___TCGA-UCEC	Uterus-AdenoCa::TCGA-BK-A6W3-01A-12D-A34Q-09	UTERINE CORPUS ENDOMETRIAL CARCINOMA::TCGA-DF-A2KV-01A-11D-A17W-09___TCGA-UCEC	Uterus-AdenoCa::TCGA-E6-A1M0-01A-11D-A142-09	UTERINE CORPUS ENDOMETRIAL CARCINOMA::TCGA-EO-A3AV-01A-12D-A19Y-09___TCGA-UCEC	Uterus-AdenoCa::TCGA-EO-A3AY-01A-12D-A19Y-09	Uterus-AdenoCa::TCGA-EY-A1GD-01A-11D-A13L-09	Uterus-AdenoCa::TCGA-EY-A1GI-01A-11D-A13L-09	UTERINE CORPUS ENDOMETRIAL CARCINOMA::TCGA-QF-A5YS-01A-11D-A31U-09___TCGA-UCEC	UTERINE CORPUS ENDOMETRIAL CARCINOMA::TCGA-QS-A5YQ-01A-11D-A31U-09___TCGA-UCEC
A	C	A	A	2	5	1	1	17	2	1	4	2	1	0	0	1	0	1	1	5	2	1	1	1	1	4	0	2	0	4	8	16	11	10	2	5	10	9	1	7	6	2
A	C	C	A	12	25	2	5	37	4	1	0	0	1	0	0	1	1	1	3	12	2	3	2	1	1	5	2	0	0	8	14	17	64	21	4	8	18	28	4	31	7	3
A	C	G	A	2	0	1	1	0	1	0	0	1	1	0	0	0	0	2	1	2	1	2	1	0	0	0	1	0	0	1	4	7	4	5	1	2	6	2	0	12	4	2
A	C	T	A	25	5	0	1	65	1	1	2	0	9	0	0	0	0	1	2	23	1	2	2	1	2	30	0	0	1	10	67	107	274	82	17	23	88	80	6	78	23	16
C	C	A	A	6	32	2	3	34	0	0	5	0	3	0	0	0	1	4	1	3	2	3	0	1	3	9	0	1	2	7	14	35	144	21	5	14	14	21	3	28	4	2
C	C	C	A	4	85	0	14	30	5	0	0	2	1	0	0	0	1	2	3	6	1	0	2	3	1	2	1	3	0	2	12	20	110	13	5	4	15	18	3	12	4	0
C	C	G	A	0	13	1	2	8	6	0	1	1	0	0	0	0	0	2	5	1	1	2	0	0	1	3	1	1	0	2	10	7	30	13	2	1	9	6	1	11	3	3
C	C	T	A	28	28	2	7	156	3	0	2	3	8	0	0	0	0	4	4	35	2	3	5	2	3	34	1	1	0	25	121	185	1248	111	16	36	118	166	13	111	18	11
G	C	A	A	3	3	3	3	32	4	0	0	3	0	0	0	1	1	0	1	7	4	7	4	4	0	2	1	2	0	7	7	25	47	3	5	5	10	10	0	11	6	9
G	C	C	A	7	30	2	13	42	4	0	3	1	2	0	0	0	0	0	0	15	1	1	3	0	0	5	0	1	3	8	11	21	174	11	4	7	19	16	7	28	4	1
G	C	G	A	2	1	1	0	2	0	0	2	0	0	0	0	0	0	0	2	3	0	1	0	1	1	0	1	0	0	1	1	2	13	0	0	0	2	2	1	1	2	1
G	C	T	A	29	3	2	5	90	2	1	1	0	2	0	0	0	0	1	1	28	1	2	4	0	0	43	1	1	0	11	58	95	713	54	11	30	96	77	17	55	14	7
T	C	A	A	70	4	1	3	291	6	0	3	0	63	0	0	1	0	28	7	93	2	3	0	4	4	148	3	1	0	55	243	361	38	357	107	157	343	258	54	334	132	97
T	C	C	A	17	16	3	3	74	5	0	2	0	3	0	0	0	0	10	4	16	3	3	4	0	1	11	2	0	1	17	67	59	138	82	15	28	57	69	15	62	21	6
T	C	G	A	7	2	0	0	22	2	0	0	0	8	0	0	1	1	10	5	15	1	0	1	1	0	13	2	0	0	2	35	54	5	36	12	16	40	32	1	42	11	12
T	C	T	A	568	4	5	1	2654	3	2	3	1	228	0	0	0	0	11	3	734	0	5	2	3	2	1046	1	0	3	448	1802	2393	777	2047	619	989	2077	2024	342	2313	713	484
A	C	A	G	1	1	1	1	13	2	0	3	0	1	0	0	0	0	0	0	1	0	0	1	1	0	1	1	0	1	3	4	2	10	3	2	1	2	4	2	1	1	1
A	C	C	G	0	1	2	1	4	0	0	2	0	0	0	0	0	0	1	0	2	0	1	0	0	1	0	2	0	1	1	2	2	6	0	0	0	3	1	1	0	1	0
A	C	G	G	0	0	0	0	3	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	1	0	0	1	1	0	1	1	0	0	0	0	0	0	0	1	0	0
A	C	T	G	0	4	1	1	9	2	0	0	0	0	0	0	0	0	2	1	0	3	0	3	0	1	1	3	0	1	0	4	2	9	5	1	1	3	0	1	2	1	0
C	C	A	G	0	0	1	1	5	1	1	0	0	0	0	0	0	1	2	1	0	2	0	1	0	2	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	2
C	C	C	G	0	23	4	5	2	1	0	1	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
C	C	G	G	2	1	2	1	0	2	0	2	1	0	0	0	0	0	5	0	0	0	0	0	0	5	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0
C	C	T	G	1	4	0	3	7	1	0	1	1	1	0	0	0	0	7	1	2	4	0	0	1	2	0	2	0	0	0	1	2	2	3	0	0	3	1	0	2	1	1
G	C	A	G	2	0	1	0	10	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	2	6	2	0	12	4	1	1	2	1	0	5	0	1
G	C	C	G	1	6	1	1	4	3	1	0	1	0	0	0	0	0	2	0	2	0	0	1	0	0	2	1	0	0	1	1	5	13	3	1	2	1	3	3	4	1	1
G	C	G	G	0	4	0	5	5	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	2	0	0	1	0	0	0
G	C	T	G	1	1	1	0	6	1	0	0	0	0	0	0	0	0	1	1	4	3	1	0	0	2	0	3	1	0	2	4	2	18	2	0	3	1	5	0	4	0	2
T	C	A	G	3	4	2	0	3	0	0	1	1	1	0	0	0	0	148	28	0	2	2	4	3	8	0	4	0	2	0	1	0	3	1	0	0	3	0	0	0	0	0
T	C	C	G	1	4	1	1	6	2	0	5	2	0	0	0	0	0	39	8	3	0	2	2	1	4	0	2	0	1	0	1	1	1	0	1	0	0	1	1	0	0	0
T	C	G	G	0	0	0	0	0	1	0	1	1	0	0	0	0	0	22	7	1	0	0	0	1	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	1	0
T	C	T	G	4	9	3	2	8	1	0	2	1	0	0	0	0	0	183	32	1	4	1	3	4	12	2	2	1	1	0	3	1	2	1	0	1	3	1	0	1	0	2
A	C	A	T	7	1	6	5	41	6	0	0	3	1	0	0	2	0	5	2	5	1	3	5	3	2	8	1	2	4	2	5	20	347	14	2	10	11	12	5	12	4	4
A	C	C	T	4	9	6	8	44	5	3	19	1	4	0	0	0	0	3	0	12	1	1	2	1	2	19	1	4	2	11	29	34	417	28	16	12	28	32	7	41	22	5
A	C	G	T	87	6	7	12	249	9	12	5	17	31	0	0	0	1	4	7	79	15	4	19	4	4	70	14	18	12	53	114	185	1979	127	47	45	122	109	36	140	76	38
A	C	T	T	12	12	2	1	53	3	1	9	0	4	0	0	0	2	4	2	16	3	2	1	2	1	12	1	2	0	7	22	41	320	40	16	14	39	32	9	44	18	5
C	C	A	T	3	3	19	7	30	8	3	53	3	1	0	0	0	0	8	4	1	2	2	2	1	3	1	1	4	2	5	7	11	100	11	1	3	6	6	6	18	1	5
C	C	C	T	8	14	16	10	44	3	0	61	3	0	0	0	0	0	4	2	5	3	2	5	2	2	7	1	2	1	10	16	13	269	15	3	5	20	15	7	22	7	5
C	C	G	T	46	15	5	14	200	8	14	17	24	15	0	0	1	2	8	8	30	8	8	18	4	4	23	12	11	7	46	65	135	1135	92	23	34	74	62	41	90	36	22
C	C	T	T	9	19	16	7	57	8	1	49	0	2	0	0	0	1	5	6	8	4	2	0	1	2	9	1	0	1	10	22	19	217	27	13	6	33	27	8	29	9	6
G	C	A	T	8	4	7	3	69	2	1	3	1	2	0	0	0	0	5	2	10	1	3	3	6	2	14	1	0	1	9	13	25	871	13	3	11	24	17	8	20	7	5
G	C	C	T	34	19	7	18	300	7	0	11	5	14	0	0	1	0	1	4	51	0	1	2	5	1	62	1	2	4	41	77	115	1419	125	58	66	112	74	36	125	54	32
G	C	G	T	147	12	9	9	641	8	8	1	20	52	1	0	0	0	7	6	159	11	19	26	4	6	191	14	20	18	125	193	331	3290	250	108	154	242	161	109	274	107	55
G	C	T	T	52	5	11	2	286	5	2	20	7	15	0	0	0	0	4	6	58	0	2	2	1	1	84	4	2	1	38	77	115	778	93	37	43	106	91	28	114	51	17
T	C	A	T	19	15	45	4	64	2	1	63	2	4	0	0	0	0	150	27	6	3	5	6	3	12	10	3	4	2	11	19	20	147	24	7	7	22	12	11	22	12	5
T	C	C	T	33	10	41	8	237	6	0	160	2	17	0	0	0	1	34	18	51	5	3	2	1	4	37	3	3	3	48	101	72	356	92	39	40	111	84	35	148	57	32
T	C	G	T	505	6	10	9	2030	1	3	76	12	273	0	0	2	1	54	17	418	11	8	18	5	6	606	11	6	6	525	1052	1780	757	1448	467	620	1235	870	336	1571	723	387
T	C	T	T	65	9	41	5	430	5	1	53	3	29	0	0	0	0	86	20	52	0	2	8	3	5	102	5	5	2	76	169	209	275	214	66	80	184	143	35	261	93	58
A	T	A	A	4	18	23	6	8	1	1	2	0	0	33	30	21	46	1	1	2	0	0	1	1	2	1	3	0	1	0	3	4	2	5	1	1	2	0	0	6	0	0
A	T	C	A	2	18	27	3	11	2	1	0	1	0	1	0	0	1	0	2	1	0	0	1	0	2	1	4	0	0	0	0	2	9	2	1	1	3	3	1	2	3	1
A	T	G	A	2	1	2	3	5	3	1	1	0	0	0	0	0	0	0	1	0	0	1	1	1	1	1	2	0	0	0	0	1	2	0	0	0	0	0	0	0	0	1
A	T	T	A	12	38	26	7	42	2	1	1	1	2	0	0	0	0	1	2	6	1	2	0	0	2	7	2	0	0	5	15	27	62	14	6	8	13	15	4	15	5	3
C	T	A	A	1	2	1	1	4	0	1	0	0	0	24	19	60	102	0	1	1	0	0	0	0	0	0	1	1	0	0	0	0	2	0	1	0	1	1	0	1	0	0
C	T	C	A	1	2	30	2	7	3	1	1	1	1	0	0	0	0	0	3	0	0	0	1	0	0	1	0	2	3	1	2	4	18	2	0	1	4	2	2	4	1	0
C	T	G	A	5	4	17	6	5	3	0	0	1	0	1	1	2	2	2	0	1	0	0	1	0	1	1	0	1	3	1	0	8	4	6	2	1	5	3	0	7	0	1
C	T	T	A	3	4	36	7	14	1	0	5	2	1	0	0	1	1	0	2	4	1	1	4	3	1	4	1	3	15	2	8	10	20	9	2	2	4	13	1	10	2	0
G	T	A	A	1	3	2	3	5	1	0	0	0	0	9	8	11	25	0	0	0	1	0	1	0	0	1	1	0	1	0	0	1	1	0	0	1	2	2	0	1	1	0
G	T	C	A	1	4	12	1	3	2	0	0	1	0	0	0	0	0	1	2	3	1	1	1	1	0	0	0	0	0	1	1	3	35	3	0	0	1	3	2	0	0	0
G	T	G	A	3	1	4	1	8	0	0	2	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	2	0	0
G	T	T	A	2	19	21	8	12	1	1	1	2	1	0	0	0	1	0	0	7	3	1	3	1	2	1	0	1	0	0	2	4	9	6	2	2	4	5	0	8	2	0
T	T	A	A	7	14	6	11	22	1	3	0	0	0	1	0	8	7	1	3	6	0	0	2	0	0	2	0	1	1	1	3	8	17	8	2	1	6	7	4	6	4	1
T	T	C	A	3	14	30	3	8	2	1	1	0	0	0	0	0	0	1	1	4	1	0	1	0	0	2	4	0	0	0	6	6	14	2	0	1	7	5	4	6	1	0
T	T	G	A	1	1	4	4	13	1	0	0	0	0	0	0	0	0	0	0	4	2	0	0	0	0	1	0	1	2	2	4	11	2	10	2	0	1	7	1	5	1	0
T	T	T	A	6	53	83	10	47	1	7	1	0	1	0	0	0	0	3	2	7	4	2	4	1	6	7	4	0	2	8	20	33	14	36	12	11	20	23	3	34	8	3
A	T	A	C	11	68	40	10	153	6	0	3	1	3	0	0	0	1	10	3	21	3	1	0	0	2	20	4	2	0	14	16	20	145	28	5	4	26	35	11	24	8	5
A	T	C	C	6	34	31	10	95	4	3	1	0	3	0	0	0	0	6	1	23	5	1	2	1	1	14	3	1	1	11	25	31	94	33	13	9	31	25	11	23	5	7
A	T	G	C	4	8	7	1	106	4	1	1	1	2	0	0	0	0	2	2	14	3	1	3	1	3	8	1	0	1	9	13	20	103	22	8	9	34	32	10	20	8	4
A	T	T	C	10	138	110	39	96	5	4	2	0	5	0	0	0	0	7	7	19	6	1	0	2	5	12	4	0	2	7	25	24	56	25	10	16	39	32	11	28	14	8
C	T	A	C	1	3	11	5	20	1	0	1	0	1	0	0	0	0	0	0	1	1	0	3	0	1	3	0	2	1	4	3	8	37	6	1	0	8	12	3	14	1	0
C	T	C	C	5	4	68	4	59	1	0	1	4	0	0	0	0	0	0	2	16	3	1	8	4	2	9	0	6	15	6	9	15	83	11	1	1	23	12	8	20	2	2
C	T	G	C	3	3	63	3	68	4	0	1	4	3	0	0	0	1	2	0	4	0	2	3	2	0	2	0	4	8	9	11	12	107	21	4	11	19	18	10	17	3	3
C	T	T	C	5	5	67	3	57	4	0	4	13	1	0	0	0	0	3	1	6	1	5	28	11	2	0	2	18	43	2	12	16	59	15	6	5	18	20	8	13	3	3
G	T	A	C	9	3	6	2	257	4	0	2	1	5	0	0	0	0	1	4	31	2	1	1	1	0	37	2	1	0	31	30	39	302	35	23	23	44	39	25	34	10	7
G	T	C	C	17	1	10	1	297	2	2	0	2	10	0	0	0	0	1	1	84	1	4	0	0	1	59	0	1	4	31	39	50	331	47	14	19	64	50	37	41	8	7
G	T	G	C	9	3	7	2	203	3	0	1	0	4	0	0	0	0	0	1	26	0	2	2	1	2	16	0	3	1	19	20	30	232	27	9	4	32	27	28	35	9	4
G	T	T	C	23	31	20	1	327	3	1	7	1	7	0	0	0	1	3	1	57	1	1	2	2	0	57	0	2	0	40	49	78	182	71	34	29	75	68	42	81	28	11
T	T	A	C	8	11	14	5	110	5	0	0	0	4	0	0	0	0	1	1	7	1	1	2	0	0	11	0	0	2	9	16	33	93	22	15	4	26	30	10	27	11	3
T	T	C	C	9	9	45	5	188	4	2	2	1	6	0	0	0	0	0	0	37	0	1	4	1	0	27	1	2	4	34	36	57	117	47	16	18	50	54	24	48	9	15
T	T	G	C	7	2	16	0	103	5	0	2	1	6	0	0	0	0	0	0	15	2	4	1	0	0	16	0	0	0	15	28	37	97	37	12	11	45	33	14	38	9	5
T	T	T	C	16	85	94	16	179	1	10	1	3	7	0	0	0	0	1	2	27	2	1	1	1	4	29	5	1	2	31	39	61	74	78	23	17	58	69	23	67	21	7
A	T	A	G	3	2	2	0	37	1	1	0	0	1	0	0	0	1	0	0	14	0	0	0	0	0	5	0	0	0	9	8	19	3	16	8	7	21	16	3	13	6	1
A	T	C	G	5	1	15	0	60	0	0	0	0	2	0	0	0	0	0	1	21	0	0	1	0	1	20	0	0	2	11	14	22	29	26	12	6	30	24	10	24	6	4
A	T	G	G	3	0	3	0	38	0	0	1	0	0	0	0	0	0	0	1	9	0	0	1	0	1	5	0	1	0	2	7	20	10	13	2	3	15	15	2	13	3	2
A	T	T	G	41	5	75	1	318	2	0	0	3	12	0	0	0	0	0	0	102	1	1	1	5	1	91	0	1	10	24	80	123	125	96	54	49	152	131	37	113	43	24
C	T	A	G	2	1	1	0	74	0	1	0	1	2	0	0	0	0	0	0	9	0	0	0	0	0	9	1	1	0	2	5	23	5	17	7	10	22	20	7	18	3	5
C	T	C	G	2	0	29	0	39	1	0	1	1	0	0	0	0	1	2	3	14	0	1	1	0	0	3	0	2	6	7	9	10	21	16	3	6	17	10	2	20	4	1
C	T	G	G	8	3	22	1	76	0	2	0	2	2	0	0	0	0	2	0	19	0	0	1	2	1	8	1	1	3	10	12	34	29	19	7	5	22	27	10	15	2	1
C	T	T	G	26	2	241	2	459	4	0	3	21	17	0	0	1	0	2	1	73	0	12	40	29	1	58	3	48	110	48	70	115	133	96	30	25	138	130	63	117	32	11
G	T	A	G	0	2	0	0	40	1	0	0	0	0	0	0	0	0	1	2	15	0	1	0	0	2	5	0	1	0	1	0	7	4	4	4	1	9	4	1	8	3	0
G	T	C	G	1	3	7	1	60	0	1	1	0	2	0	0	0	0	0	0	32	0	0	2	0	0	16	1	0	2	5	9	8	48	3	4	8	13	14	10	14	2	3
G	T	G	G	2	0	6	5	42	1	0	1	0	1	0	0	0	0	0	0	30	1	2	0	0	0	6	2	1	0	2	1	3	25	6	5	3	10	4	1	2	0	2
G	T	T	G	11	5	59	2	91	0	1	0	3	1	0	0	0	0	1	0	65	0	1	10	5	0	19	0	12	21	3	14	31	72	16	12	5	37	20	13	23	5	4
T	T	A	G	5	15	9	1	141	2	1	0	0	5	0	0	0	0	3	0	23	0	0	0	0	1	27	3	0	0	9	32	94	2	84	22	31	69	63	27	78	19	16
T	T	C	G	8	16	39	1	177	1	0	2	0	3	0	0	0	0	1	0	31	0	0	3	0	1	27	0	0	1	24	39	44	30	49	19	17	63	47	24	64	13	8
T	T	G	G	3	1	14	2	43	0	0	2	1	2	0	0	0	0	3	0	11	1	0	2	1	0	6	1	1	0	3	7	19	7	16	6	9	15	16	2	22	9	1
T	T	T	G	130	86	356	18	1518	3	7	2	3	63	0	0	0	0	0	2	376	4	7	10	3	2	321	8	3	11	136	399	623	170	563	234	288	713	544	192	606	207	139
